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	<title>Giovanna Di Sauro &#187; Science</title>
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	<link>http://gdisauro.com</link>
	<description>Giovanna Di Sauro's blog and website, a place where you can learn about science, technology, and get to know me a little better.</description>
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			<title>Giovanna Di Sauro</title>
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			<description>Giovanna Di Sauro's blog and website, a place where you can learn about science, technology, and get to know me a little better.</description>
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		<item>
		<title>Blowout at ScienceBlogs &#8211; and why it should matter to you</title>
		<link>http://gdisauro.com/2010/07/blowout-at-scienceblogs/</link>
		<comments>http://gdisauro.com/2010/07/blowout-at-scienceblogs/#comments</comments>
		<pubDate>Tue, 27 Jul 2010 00:00:04 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Blogging]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Bora]]></category>
		<category><![CDATA[communication]]></category>
		<category><![CDATA[crisis management]]></category>
		<category><![CDATA[PepsiCo]]></category>
		<category><![CDATA[ScienceBlogs]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=197</guid>
		<description><![CDATA[Who would have thought&#8230; ScienceBlogs, the most well-known science blogging community around, seems to be falling apart. Although I doubt that this is the end of ScienceBlogs, some recent departures will have an impact on the science blogosphere. I for one have two simple questions: what will happen to ResearchBlogging? Is the Open Laboratory going [...]]]></description>
			<content:encoded><![CDATA[<p>Who would have thought&#8230; <a href="http://scienceblogs.com/channel/about.php" rel="nofollow" >ScienceBlogs</a>, the most well-known science blogging community around, seems to be falling apart. Although I doubt that this is the end of ScienceBlogs, some recent departures will have an impact on the science blogosphere. I for one have two simple questions: what will happen to <a href="http://researchblogging.org/" rel="nofollow" >ResearchBlogging</a>? Is the <a href="http://scienceblogs.com/clock/2010/05/open_laboratory_2010_-_submiss_5.php" rel="nofollow" >Open Laboratory</a> going to be <a href="http://scienceblogs.com/clock/2010/07/scienceblogs_and_me_and_the_ch.php" rel="nofollow" >moving with Bora</a>?</p>
<p>Why should it concern me, may you ask? For two reasons: the impact on media visibility of accessible and high-quality science commentaries generated by bloggers, and in general how this crisis is another reminder that certain potentially <a href="http://www.bbc.co.uk/news/business-10434908" rel="nofollow" >damaging corporate approaches to crisis management are still alive and well</a>.</p>
<p><span id="more-197"></span><br />
Let&#8217;s talk about the first concern: researchers (and science bloggers) are a pretty individualist bunch. ScienceBlogs gave bloggers a chance to create a community of high-quality blogs, but it also gave the readers a chance to learn a lot by going to one place&#8230; it was the &#8220;supermarket of science blogging&#8221;. And, given that science and scientists have a notoriously hard time penetrating the mainstream media, this gave them a chance to gain visibility, as well as to organize themselves. I might be wrong, but it felt like it was the nature of the interactions among bloggers at ScienceBlogs that promoted the birth of ResearchBlogging.</p>
<p>What about the second concern? Corporate over at SB made the usual mistake: they wanted a piece of yummy pie (or should I say, pop) and, because of their gluttony, avoided consulting their bloggers (who, I am sure, they knew might have disapproved of their plans). So they just tried to fly things under everyone&#8217;s radar, and introduced a full-blown corporate food science blog fully written by PepsiCo as a new ScienceBlog. I am sure that this would have been fine, if only this blog were treated for what it is &#8211; a form of advertising.</p>
<p>What surprised me quite unpleasantly is the obvious fracture between the bloggers and their direct SB contacts (the &#8220;overlords&#8221;, as they are called), and SMG corporate. This would normally not surprise anyone: most corporate structures still think of opacity as a professional value to be upheld, no matter what. However, what is surprising is that they still thought they could get away with this while dealing with a bunch of freethinking, outspoken bloggers &#8211; bloggers who are the only reason why SB can exist in the first place! This is not just an oversight, it&#8217;s a bad case of cataracts.</p>
<p>Needless to say, I am sure that SB will keep going, just like Bora and other bloggers will. Science blog networks, which were strongly inspired by ScienceBlogs, will keep popping up, even though it is becoming evident that such networks do require a serious investment in IT to run efficiently. But IT is not enough, as managing networks requires a management mentality not fully understood (or even feared) by many corporate hierarchies: it requires true communication, honesty and transparency, especially during harder times.</p>
<p>When it comes to human networks, lip service to communication and transparency just won&#8217;t do: we are <a href="http://www.americanscientist.org/bookshelf/pub/marc-hauser" rel="nofollow" >wired to spot &#8220;cheaters&#8221;</a> and, if we perceive anyone to be cheating, we will attempt to do what we can to make sure they do not get rewarded for it. Bora and others felt deprived of their credibility, and lost trust in the SB exec: their departure was only the very human and logical consequence of that perception.</p>
<p>Evidence-based decision seems to be having a really hard time climbing up that corporate ladder, even at Science Blogs. How could have this been managed better?</p>
<p><strong>The first step of crisis management is to avoid crisis altogether.</strong> You have quality control systems in place, internal/employee communications, etc. All of these aim at avoiding crisis from emerging. Crisis, however, usually emerge because there are opposing interests at work, and one of them is given privilege over the other at all costs. This is an obviously unsustainable way of managing any business. Let&#8217;s take this fiasco as an example:</p>
<ul>
<li>Bloggers&#8217; interests: transparency, honesty, free speech, and a (small but regular) paycheck, proportional to their blog traffic;</li>
<li>Corporate&#8217;s interests: profit profit profit.</li>
</ul>
<p>The crisis has a chance to bud when these interests are seen as opposing, not complementing each other. We could make countless other examples where the two interests which are seen as competing are safety and profit (BP and Toyota anyone?), but this is the general idea.</p>
<p><strong>Here is the tricky part: these interests are usually not at odds with each other. However, one might involve an expense in the short term, while the other is mistakenly seen as involving no expenses</strong>. Just because your aim is called &#8220;profit&#8221;, it does not mean that reaching it will not involve any expenses. Moreover, financial profit <em>per se</em> is something that is <strong>net </strong>of any expenses, not something that does not require any expenses whatsoever.</p>
<p>Before you start saying that what I just said is obvious, think again. This is the thinking that leads to crises:</p>
<p>Expense = expense; profit = earnings &#8211; expenses</p>
<p>This is, instead, reality:</p>
<p>expense = expenses, some of which are necessary, and some of which can actually increase your profit in the long run; profit = earnings &#8211; expenses (where expenses are necessarily different from zero)</p>
<p>Often one thinks that all you need to get there is one or both of these two things: eliminate expenses (ideally to zero) and increase your earnings (ideally indefinitely). The problem with this is that earnings do not emerge out of thin air (unless you are dealing with derivatives): they are something generated out of someone&#8217;s work, something that has a cost associated with it. In a way, that cost is the only reason why you can end up with earnings at all at the end of the day. Maths will not tell you this, as you can have expenses = zero and the equation will do just fine.</p>
<p>In this case, bloggers are a cost, and their ideas could be perceived as hard to handle. But those ideas are the reason why the business and its earnings exist in the first place! You cannot have those earnings without those bloggers, and therefore those ideas being churned out. Not paying your bloggers and trying to sneak past them is not the way to increase your profits &#8211; it is the way to land into a sure crisis. And it is <a href="http://blogs.hbr.org/cs/2010/07/the_coming.html" rel="nofollow" >unsustainable</a> in the long run.</p>
<p><strong>Further Reading: a brief roundup of the ScienceBlogs fiasco</strong></p>
<ul>
<li><a href="http://scienceblogs.com/clock/2010/07/scienceblogs_and_me_and_the_ch.php" rel="nofollow" id="a159386" >A Farewell to Scienceblogs: the Changing Science Blogging Ecosystem</a></li>
<li><a href="http://scienceblogs.com/grrlscientist/2010/07/scienceblogs_zombieblogs.php" rel="nofollow" id="a159484" >ScienceBlogs = ZombieBlogs</a></li>
<li><a href="http://scienceblogs.com/insolence/2010/07/bora_and_palmd_leave_scienceblogs_what_t.php" rel="nofollow" id="a159478" >Bora and PalMD leave ScienceBlogs: What to do now?</a></li>
<li><a href="http://scienceblogs.com/authority/2010/07/pepsico_scienceblogs_and_the_f.php" rel="nofollow" id="a158781" >Pepsico, Scienceblogs, and the Future</a></li>
<li><a href="http://scienceblogs.com/pharyngula/2010/07/pharyngula_on_strike.php" rel="nofollow" id="a159514" >Pharyngula on STRIKE</a> (P.S. not anymore&#8230; but still <a href="http://scienceblogs.com/pharyngula/2010/07/its_not_just_scienceblogs.php" rel="nofollow" >thinking about what is happening in science blogging</a>)</li>
<li><a href="http://blogs.discovermagazine.com/loom/2010/07/07/oh-pepsi-what-hath-thou-wrought/" rel="nofollow" title="Permanent Link: Oh, Pepsi, What Hast Thou Wrought?" rel="bookmark" >Oh, Pepsi, What Hast Thou Wrought?</a></li>
</ul>

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		<title>Are you doing it wrong?</title>
		<link>http://gdisauro.com/2008/05/are-you-doing-it-wrong-2/</link>
		<comments>http://gdisauro.com/2008/05/are-you-doing-it-wrong-2/#comments</comments>
		<pubDate>Fri, 30 May 2008 00:03:25 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Humor]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[doing science]]></category>
		<category><![CDATA[respectful insolence]]></category>
		<category><![CDATA[wrong]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=96</guid>
		<description><![CDATA[When I saw this, I just had to post it on my blog. I do not think I have ever seen a better way to describe science, and whether you are doing it wrong. <br />]]></description>
			<content:encoded><![CDATA[<p>When I saw this, I just had to post it on my blog.<br />
<span id="more-96"></span><br />
I do not think I have ever seen a better way to describe science, and whether you are doing it wrong. Found via <a href="http://scienceblogs.com/insolence/2008/05/how_do_you_know_when_youre_doing_science.php" rel="nofollow" >Respectful Insolence</a>.</p>
<p><span style="text-decoration: underline;"><a href="http://gdisauro.com/wp-content/uploads/2008/05/motivator2459909.jpg"><img class="aligncenter size-full wp-image-97" title="motivator2459909" src="http://gdisauro.com/wp-content/uploads/2008/05/motivator2459909.jpg" alt="" width="500" height="400" /></a></span></p>
<p><span style="text-decoration: underline;"><br />
</span></p>

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		<title>Is cancer a cure?</title>
		<link>http://gdisauro.com/2008/05/is-cancer-a-cure/</link>
		<comments>http://gdisauro.com/2008/05/is-cancer-a-cure/#comments</comments>
		<pubDate>Wed, 28 May 2008 06:10:34 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Cancer biology]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cure]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[stem cell therapy]]></category>
		<category><![CDATA[TED]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=88</guid>
		<description><![CDATA[A few days ago, while navigating in TED territory, I stumbled into this talk given by a Princeton sophomore. The main topic of the talk was to present a different view of cancer than the one we are usually accustomed to. While we are used to thinking that cancer is a terrible disease, it would hardly cross our mind that it could be some kind of a cure, or better an attempt to heal parts of our body that are damaged - an attempt that often gets out of control.<br />]]></description>
			<content:encoded><![CDATA[<p>A few days ago, while navigating in <a href="http://www.ted.com/index.php/" rel="nofollow" >TED</a> territory, I stumbled into this talk given by a Princeton sophomore. The main topic of the talk was to present a different view of cancer than the one we are usually accustomed to. While we are used to thinking that cancer is a terrible disease, it would hardly cross our mind that it could be some kind of a cure, or better an attempt to heal parts of our body that are damaged &#8211; an attempt that often gets out of control.<br />
<span id="more-88"></span><br />
Before going on to read the discussion, make sure you watch the talk. Mind you, if you do not want to get to know the sophomore&#8217;s family history, I suggest you skip to the ninth minute of the movie.</p>
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<p>[If you cannot see the movie, you can <a href="http://www.ted.com/talks/view/id/12" rel="nofollow" >watch it here</a>.]</p>
<p>It was quite interesting, wasn&#8217;t it? Let me summarize the main points raised in the talk. Eva suggests that cancer might simply be part of a natural response mechanism aimed at repairing tissue damage. Somehow most of our body, according to Eva, has not had enough time to evolve to handle the response perfectly, so when the damage is prolonged, cancer often arises. However, there are tissues in our body, such as skeletal muscle, which are well-adapted to sustaining damage of various kinds, and is therefore able to keep cancer under control by means of either moderating nutrient access to this cancer, or by inducing differentiation of cancer cells <em>in situ</em>. Eva suggests that one day we might be able to use the mechanisms behind the repair system (basically, cancer) to repair tissue AND control the spread of cancerous tissue. In this sense, cancer could almost become a cure, a form of &#8220;therapy&#8221;, as she calls it.</p>
<p>I am not to extensively criticize her point of view, as there are some obvious issues with it. There seems to be an underlying assumption that cancer stem cells are always normal stem cells recruited to a damaged region of the body for repair purposes, and that only after getting there these cells become cancerous. This is a mistake, from my point of view. It makes perfect sense that there is an accelerated regeneration process in a damaged tissue. Think of the skin: if you cut yourself, now your skin stem cells will have to work harder to produce new cells, so to repair the damage. I am also aware that prolonged inflammation states associated with tissue damaged have been <a href="http://www.ncbi.nlm.nih.gov/pubmed/12490959" rel="nofollow" >showed to predispose to cancer</a>.</p>
<p>But much cancer does not necessarily happen in response to inflammation states. Lung cancer is a good candidate for the inflammation militia, but what about leukemia? Brain cancer? Breast cancer? It is known that many cancers are caused by a minuscule population of stem-cell-like cells that cause the disease: some of these probably were originally normal stem cells, but there is mounting evidence that at least in some cases, cells that were not stem cells acquire, through a mix of somatic insults and genetic predisposition, a new undifferentiated state &#8211; and that &#8220;un-differentiation&#8221; and proliferation are actually caused by separate mechanisms.</p>
<p>The talk often oversimplifies, but what really struck me is the idea that, indeed, it is very rare to hear of skeletal muscle cancer. In fact, this must be the first time in my life I even hear of the concept! It never crossed my mind, for a moment, how interesting this could get. Eva suggests that, somehow, skeletal muscle tissue can regulate angiogenesis to limit tumor growth. But I think the explanation she offers last is the one that makes more sense: there must be strong differentiation factors, maybe <em>myoD</em> itself, that are limiting tumor growth &#8211; so that, even if the original nucleus of stem cells remains, it can only rarely grow to a full-blown metastasis, as all other progenitors rapidly differentiate into muscle cells.</p>
<p>The idea is fascinating, and easily explorable. All you need is test it in immuno-deficient mice using tumor cells from syngeneic mice bearing a visible/otherwise detectable marker. You can look at metastatic frequencies in various tissues and, if really the frequency is significantly lower (and metastases smaller) in skeletal muscle, you could run some FACS and look at the proportion of cancer progenitor cells in the micrometastases versus the normal ones &#8211; if her idea is right, you would expect to see very few of them, as well as many differentiated cells originally derived from the tumor.</p>
<p>What intrigues me about all this is manly that the cancer cells are not different in one or two things from the other cells. Their entire behavior is changed &#8211; and only some form of powerful &#8220;undifferentiating agent&#8221; could do that. In cancer research, we often try to look for the &#8220;magic molecule&#8221;. But I think it is time to start thinking in terms of a system of interactions involving DNA, epigenetic modifications, proteins and the relations (pathways) between them. The whole system defines cellular behavior, and it is this behavior, not just a couple of molecular players, that is actually changed in some key cells when cancer arises.</p>
<p>Thus, although I am skeptical that cancer might be a therapy, the focus on differentiation and changes in cellular behavior are thing to keep working on, as well as watching carefully, in the next years. Especially for those who are working on <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=18357342" rel="nofollow" >stem cell therapies</a> &#8211; whose most common side effect is&#8230;cancer.</p>
<p><strong>Post Scriptum:</strong> I have been included in the latest edition of <a href="http://genegenie.wordpress.com/" rel="nofollow" >Gene Genie</a>. The main topic of this edition was the inauguration of Google Health, but you will find a lot more related to health in general, and genetics specifically, by reading the Genie hosted over at <a href="http://www.highlighthealth.com/blog-events/gene-genie-32-googling-the-genie/" rel="nofollow" >Highlight Health</a>.</p>

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		<title>Tasmanian Park: extinct mammalian DNA back to life</title>
		<link>http://gdisauro.com/2008/05/tasmanian-park-extinct-dna/</link>
		<comments>http://gdisauro.com/2008/05/tasmanian-park-extinct-dna/#comments</comments>
		<pubDate>Tue, 20 May 2008 22:14:06 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Genomics]]></category>
		<category><![CDATA[collagen gene]]></category>
		<category><![CDATA[DNA]]></category>
		<category><![CDATA[jurassic park]]></category>
		<category><![CDATA[mammalian dna]]></category>
		<category><![CDATA[plos one]]></category>
		<category><![CDATA[reporter gene]]></category>
		<category><![CDATA[tasmanian tiger]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=83</guid>
		<description><![CDATA[How many of you remember Jurassic Park? If you do, you would probably also remember that resuscitating a species which has undergone extinction long ago would basically be impossible because of, among other things, DNA degradation. But what about species that are more recent, and whose tissue samples have been carefully stored? <br />]]></description>
			<content:encoded><![CDATA[<p>How many of you remember Jurassic Park? If you do, you would probably also remember that resuscitating a species which has undergone extinction long ago would basically be impossible because of, among other things, DNA degradation. But what about species that are more recent, and whose tissue samples have been carefully stored? We know that ancient DNA can now be better sequenced (think of frozen mammoths and Neanderthal bones). Will the day come when we will be able to resuscitate them?<br />
<span id="more-83"></span><br />
A <a href="http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0002240" rel="nofollow" >new paper published in PLOS One</a> named &#8220;Resurrection of DNA Function <em>In Vivo</em> from an Extinct Genome&#8221; shows that it is possible to &#8220;resuscitate&#8221;, if not the entire organism, at least a piece of its genome &#8211; one whose function is conserved in species that are still among us. To show this, the researchers behind the paper picked the genome of a species whose last exemplar died in captivity in 1936, and which constitutes an example of marsupial carnivores: the Tasmanian tiger.</p>
<p><a href="http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0002240" rel="nofollow" ><img class="alignnone size-medium wp-image-84" title="journalpone0002240g003" src="http://gdisauro.com/wp-content/uploads/2008/05/journalpone0002240g003-149x300.png" alt="" width="149" height="300" /></a></p>
<p>To do this, the authors extracted DNA from three century-old pouch young stored in alcohol, and a dried pelt. The <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=2928314" rel="nofollow" >extraction methods</a> including classic ethanol precipitations and sucrose gradients (to eliminate contaminants). As usual in this cases, the DNA resulted to be fragmented, but the researchers were aided in their effort to verify their results by the presence of different DNA sources, and the choice of a well-characterized sequence, the transcriptional enhancer of a collagen gene (<em>Col2a1</em>). Comparing the results obtained from PCR reactions run on DNA extracted from the three different sources helped assure that the DNA was not contaminated (as human collagen genes would be similar, but not identical, to those belonging to the Tasmanian tigers).</p>
<p>The researchers then decided to study the function of this element (reconstituted by PCR) in vivo. Multiple copies of the enhancers were added in front of the he human β-globin basal promoter fused to <em>lacZ</em> and followed by a <a href="http://en.wikipedia.org/wiki/Polyadenylation" rel="nofollow" >polyadenylation</a> signal &#8211; therefore producing a chimeric <a href="http://www.iscid.org/encyclopedia/Reporter_Gene" rel="nofollow" >reporter gene</a> to use in their assays. This reporter would reveal the expression pattern of the genetic element, as well as the strength of expression in developing tissues. This reporter construct was then injecting in murine zygotic <a href="http://en.wikipedia.org/wiki/Pronucleus" rel="nofollow" >pronuclei</a>, and its expression assayed at different stages of mouse development.</p>
<p>As you can see from the third figure in the paper, you can see that the reporter is most strongly expressed in regions where cartilage is forming &#8211; the skull, the tail, and the developing limbs.  In section g, you can even distinguish the digits in the developing mouse forelimb.  These results indicate that, regardless of some variation in the strength of the expression, the transgene made out of the &#8220;extinct DNA&#8221; is expressed in the same pattern as that if the endogenous transgene &#8211; which is also expressed at sites of cartilage development and growth. This therefore means that the function of the modern murine element, and the one belonging to the extinct Tasmanian tiger, is actually conserved. It also suggests that this method could be used to analyze the function of genomic material extracted from extinct specimens in vivo.</p>
<p>While this does not mean that we will be able to resuscitate the Tasmanian tiger any time soon (if not at all), it gives us another glimpse on the practical power of evolutionary theory, and the incredible genetic conservation among species, even those that evolved quite separately from each other.</p>
<p><span style="\"><a href="\" rel="nofollow" ><img src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-Trans.png" alt="ResearchBlogging.org" width="80" height="50" /></a></span><br />
<span class="Z3988" title="ctx_ver=Z39.88-2004&#038;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&#038;rft.aulast=Pask&#038;rft.aufirst=Andrew&#038;rft.aumiddle=J&#038;rft.au=Andrew+ Pask&#038;rft.au=Richard+R+Behringer&#038;rft.au=Marilyn+B+Renfree&#038;rft.au=Erik+I+Svensson&#038;rft.title=PLoS+ONE&#038;rft.atitle=Resurrection+of+DNA+Function+In+Vivo+from+an+Extinct+Genome&#038;rft.date=2008&#038;rft.volume=3&#038;rft.issue=5&#038;rft.spage=e2240&#038;rft.genre=article&#038;rft.id=info:DOI/10.1371%2Fjournal.pone.0002240"></span>Pask, A.J., Behringer, R.R., Renfree, M.B., Svensson, E.I. (2008). Resurrection of DNA Function In Vivo from an Extinct Genome. <span style="font-style: italic;">PLoS ONE, 3</span>(5), e2240. DOI: <a href="http://dx.doi.org/10.1371/journal.pone.0002240" rel="nofollow" rev="review" >10.1371/journal.pone.0002240</a></p>

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		<title>Gay love on the fly</title>
		<link>http://gdisauro.com/2008/05/gay-love-on-the-fly/</link>
		<comments>http://gdisauro.com/2008/05/gay-love-on-the-fly/#comments</comments>
		<pubDate>Wed, 07 May 2008 22:48:54 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Neurobiology]]></category>
		<category><![CDATA[drosophila]]></category>
		<category><![CDATA[fruitless]]></category>
		<category><![CDATA[light]]></category>
		<category><![CDATA[sex]]></category>
		<category><![CDATA[the Peak]]></category>
		<category><![CDATA[writing]]></category>

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		<description><![CDATA[I will be back on Monday (I deserve a holiday once a year!), but in the meantime you can read this article written by yours truly, but edited and published by the Peak, Simon Fraser University's independent newspaper. This article is more of a reflection on the results of the recent study on fruitless flies, results I have already talked about on this blog, and it has been written for a general audience. Feedback and comments are welcome.]]></description>
			<content:encoded><![CDATA[<p>I will be back on Monday (I deserve a holiday once a year!), but in the meantime you can read this article written by yours truly, but edited and published by <a href="http://www.the-peak.ca/about" rel="nofollow"  target="_blank">the Peak</a>, Simon Fraser University&#8217;s independent newspaper. I must have been the only consistent science contributor in &#8211; say, three years or so? The editing is not always great when it comes to science articles, but they did quite well this time, apart from italicizing &#8220;wild-type&#8221;, &#8220;flies&#8221;, and introducing (or tolerating?) some awkward syntax here and there. <a href="http://www.the-peak.ca/article/3501" rel="nofollow"  target="_blank">The article</a> is more of a reflection on the results of the recent study on <em>fruitless </em>flies, results I have <a href="http://gdisauro.com/2008/04/flies-turned-on-by-light/" target="_blank">already talked about</a> on this blog, and it has been written for a general audience. Feedback and comments are welcome. Next up will be a review on <a href="http://www.xubuntu.org/" rel="nofollow"  target="_blank">Xubuntu 8.04 Hardy Heron</a>, and of course, the second part of the &#8220;writing a blog disclaimer&#8221; series. Until then&#8230;stick around!<br />
<span id="more-53"></span><br />
<strong>Gay love on the fly</strong></p>
<p>by Giovanna Di Sauro</p>
<p>We have known about gay fly males for quite a while. In fact, the <em>fruitless</em>, or <em>fru</em>, mutants were initially created using X-ray radiation in 1963, and there is a 1989 paper describing the effects of the fruitless defects in males, tracking them back to a chromosomal inversion probably caused by DNA breaks and repairs following radiation exposure in the original strain. Although the BBC suggestively calls the results of a recent study conducted on these flies a “mind-control sex swap,” this is definitely not the case: one characteristic of <em>fruitless flies</em> is that their sexual characteristics are perfectly normal — the males are fertile and so are the females, and their bodies are not deformed. This new study completes a series of research aimed at identifying the genetic and neural components in a model of sex-linked innate behaviour — courtship in fruit flies — and has some implications for the way we think of the relationship between genes and behaviour.</p>
<p>What is the reason for studying <em>fruitless flies</em>? In <em>Drosophila melanogaster</em>, the common fruit fly, sexual orientation and courtship are very straightforward. The male is the only one that can be said to display courtship behaviour: when a male intends to court a female, it uses wing vibrations to produce a “courtship song.” This song can be identified because of the specific frequencies of the sounds emitted by the male. There are two “modes” of emission, known as the sine song, with a frequency of approximately 140–170 Hz, and the pulse song, constituted of brief and repetitive amplitude modulations in a range of approximately 150–300 Hz. Females respond by allowing the male to copulate (or not; whether the male is successful depends on a variety of other factors, including winning “fights” with other males).</p>
<p>It was already known that <em>fruitless</em> encodes a gene product necessary for the determination of sex-specific courtship behaviour in flies, and that the transcripts of this gene exist in two main versions produced by alternative splicing: a male version and a female version. A previous study done showed that the male version is necessary for the determination of male courtship behaviour and sexual orientation. The gene is, in fact, also able to induce male courtship behaviour in females when researchers artificially induce the male-specific expression. On the other hand, loss of male-specific <em>fruitless</em> in males causes the disappearance of all typical male courtship behaviour. This is further complicated by the fact that there are several different alleles (variants) of the <em>fru</em> gene, able to alter not only courtship, but sexual orientation as well. For example, males with certain mutant forms of <em>fru</em> display an enhanced form of homosexual behaviour — with males literally chasing each other and creating courtship “chains.”</p>
<p>In a study published this April in the journal <em>Cell</em>, researchers from Yale and Oxford University looked at the neuronal circuitry expressing the products of the <em>fru</em> gene in male and female flies, and investigated what happens when one activates this neuronal circuit in <em>fru</em> mutants of both sexes. The experiments showed that activating this circuit results in different responses in males and females, and that the responses are dictated by the version of the fru protein expressed by the animal. Thus, <em>wild-type</em> males and male-<em>fru</em>-expressing females can produce the wing movements and the courtship song, whereas <em>wild-type</em> females will move their wings and produce a sound, but not a courtship song. However, females will “sing out of tune,” because the ability to “sing in tune” is carried out by higher-order neurons that are probably not present or are inactivated in females.</p>
<p>Researchers have discovered methods of controlling neuronal activity, and thus manipulating fly courtship behaviour. Shining light on the neurons, which expressed a light-activated ion channel, artificially activated the neuronal circuitry. When positive ions are allowed into neurons by ion channels, the neurons depolarize and the depolarization wave, or action potential, moves all along the membrane of the neuron until it reaches the synapse, where it causes neurotransmitter release. All you need to do to activate a neuron in a controlled way is to make it express an ion channel that can be controlled.</p>
<p>How did researchers make sure that the channels were present in the neurons they are studying? They used a promoter specific to those neurons, so that the gene coding for the channels made protein only there. A promoter is a stretch of DNA that has a role in determining where the gene is expressed in the body — and what better promoter to study <em>fru</em>-expressing neurons than the <em>fru</em> promoter?</p>
<p>After the researchers had caused the right neuronal activity in the right places, using these methods, they observed the behaviour of single flies and couples. In a short video published by <em>New Scientist</em> about this study, the narrator says that “to make a female sing like a male, all you need to do is to turn on one gene, and chop her head off.” In fact, the head of female flies being observed was chopped off to facilitate the observations, as “singing” usually requires interaction with another fly, and it is intermittent — all of which is not helpful if you want to analyze the song of that one fly in the experiment. This also helped to separate the ventral ganglion from the head, increasing the success rate of the experiments, which would have otherwise been only around 1.7 per cent.</p>
<p>By now you might be wondering whether the <em>fruitless</em> gene is present in humans. While Wikipedia states that the <em>fruitless</em> gene is not present in mammals, an independent search shows that humans might have a homologue of the fly gene. The name of the homologue is ZBTB22, a gene predicted to be a transcription factor and a zinc finger DNA binding protein, just like fruitless is. Does this mean that it has the same function in humans? Well, given that we do not produce courtship songs using wings, and that sex determination is very different in humans and flies, it probably doesn’t.</p>
<p>Apart from the results and the media hype around <em>fruitless</em> flies, you might still be wondering what the scientific implications of the study are. What the results suggest is that behavioural differences between the sexes might not be necessarily due to differences in neural circuitry, but in the presence or absence of sex-specific regulators of such circuitry. This means that, although it is usually true that there are significant differences in the overall neuronal structure of males and females (with males sometimes having extra neurons dedicated to male-specific behaviour, the fact that some shared circuitry might also contribute to fundamental sex-specific behaviours is also something that needs to be considered.</p>
<p>But what are the more general philosophical implications of these studies on <em>fruitless</em> flies? Psychologists believe that our genes might be able to set a range of potential behaviours for each individual, and that interaction with the external environment determines where he or she sits in that range. According to behaviourism, a philosophy of psychology developed in the ‘60s, interaction with the environment (and possible conditioning that might be exerted by external conditions) is fundamental to the development of behaviour. One of the founders of behaviourism, John B. Watson, is known to have said that he could create, starting from any 12 infants, any behaviours and personalities he wanted, simply through conditioning and applying other behavioural techniques. While this extreme view is now generally discredited, it is still widely believed that, in general, genes alone are not able to completely determine behaviour, and therefore that no genotype is sufficient, on its own, to completely determine and elicit a given behaviour.</p>
<p>The results of the studies conducted on <em>fruitless</em> flies are a proof of principle that this is in fact possible in animals, and that at some certain behaviours can be completely determined by genetic makeup. There is a caveat to this statement: the gene needs to be necessary and sufficient to generate this behaviour, as is the case with <em>fruitless</em> and courtship behaviour in fruit flies. This does not imply that all behaviours in animals are strictly determined by their genetic makeup, but it does effectively prove that this can possibly happen, at least for some specific innate behaviours. Some might oppose that this does not extend to humans; after all, human behaviours are also affected by cultural norms, which means that humans might experience a higher pressure from their social environment to conform to certain behaviours.</p>
<p>However, we need to consider the fact that, at a cellular and molecular level, humans and flies are surprisingly similar. Studies on <em>fruitless</em> flies, from the ‘60s until now, have shown that a single gene, in this case a key behavioural regulator expressed in a sex-specific manner, can activate a neuronal circuit, and that such activation is sufficient and necessary to produce a specific behaviour, which is therefore already determined at a molecular and cellular level. This opens up the possibility that gene-specific regulation of neuronal pathways affecting or determining behaviour might be possible in other animals, and maybe even in higher organisms such as humans.</p>
<p>© 2008. <a href="http://www.the-peak.ca/about" rel="nofollow"  target="_blank">The Peak Publications Society</a></p>
<p>Male fly image courtesy of <a href="http://http//en.wikipedia.org/wiki/Image:Drosophila_melanogaster_-_side_%28aka%29.jpg" rel="nofollow"  target="_blank">Wikipedia Commons</a></p>
<p><span style="\"><a href="\" rel="nofollow" ><img src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-Trans.png" alt="ResearchBlogging.org" width="80" height="50" /></a></span><br />
Clyne, D., Miesenböck, G. (2008). Sex-Specific Control and Tuning of the Pattern Generator for Courtship Song in Drosophila.. <span style="font-style: italic;">Cell, 133</span>(?), 354-363.</p>

	<br><h4>Related posts (generated)</h4>
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	<li><a href="http://gdisauro.com/2008/04/flies-turned-on-by-light/" title="Female flies get turned on &#8211; by a light switch (April 19, 2008)">Female flies get turned on &#8211; by a light switch</a> (3)</li>
</ul>

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		<title>Who&#8217;s afraid of Bisphenol A? (part 2)</title>
		<link>http://gdisauro.com/2008/05/afraid-of-bisphenol-2/</link>
		<comments>http://gdisauro.com/2008/05/afraid-of-bisphenol-2/#comments</comments>
		<pubDate>Thu, 01 May 2008 23:16:11 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Cancer biology]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[Toxicology]]></category>
		<category><![CDATA[bisphenol A]]></category>
		<category><![CDATA[BPA]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[dental sealant]]></category>
		<category><![CDATA[estrogen]]></category>
		<category><![CDATA[food can]]></category>
		<category><![CDATA[plastic bottles]]></category>
		<category><![CDATA[toxicity]]></category>
		<category><![CDATA[xenoestrogen]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=46</guid>
		<description><![CDATA[This is the second post dedicated to Bisphenol A (BPA). In this post I will talk about the research regarding BPA biological activity, and the medical as well as ecological implications of BPA presence for us and our environment.<br />]]></description>
			<content:encoded><![CDATA[<p>This is the second part of a series of posts dedicated to Bisphenol A (BPA) and research about its toxicity and estrogenic activity. In the <a href="http://gdisauro.com/2008/04/afraid-of-bisphenol-a/" target="_blank">first part</a>, I introduced the concept of xenoestrogen, talked a little bit about what bisphenol A is and what it is used for, and told the story of the discovery of its &#8211; initially unsuspected &#8211; effects on systems usually regulated by estrogen and similar hormones. In this second and last post, I will talk about the research regarding BPA toxicity, carcinogenicity, and hint at the medical and ecological implications of BPA presence in our environment.<br />
<span id="more-46"></span><br />
BPA was tested for toxicity a very long time ago, and it was found to be mainly non-toxic, until toxicity effects started showing up in dental patients. A <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=8732943" rel="nofollow"  target="_blank">short review</a> published in 1996 in the journal Environmental Health Perspectives (PMID: 8732943) suggests that, according to different studies on different brands on dental sealants, sometimes up to 30-40% of sealant is released, in the form of unpolymerized BPA-based compounds, and could then be potentially absorbed in the intestine. The amount of BPA released has estrogenic activity. Dental sealants are used during the treatment of cavities; after the tooth is cleaned and filled, a layer of sealant is swabbed onto the tooth, and drying of coating components is induced using a heat or light source. The sealant is used frequently, especially in children, as it has been shown to reduce subsequent cavities by up to 50%. While the American Dental Association (ADA) endorses the use of dental sealants and is skeptical about the significance of BPA release, research on this topic is still being pursued. As you can imagine, the controversy has not been resolved yet: while the ADA <a href="http://jada.ada.org/cgi/content/full/137/9/1210" rel="nofollow"  target="_blank">continues to attack</a> the results of studies on BPA in sealants, studies <a href="http://jada.ada.org/cgi/content/full/137/3/353" rel="nofollow"  target="_blank">continue to notice</a> that, although the amounts of BPA being released might be of negligible importance in humans, they are still amounts with biological effects in smaller organisms (rats).</p>
<p>The situation for <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=7556016" rel="nofollow"  target="_blank">food can</a> coating resins (also known to release biologically active amounts of BPA) is <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=9288484" rel="nofollow"  target="_self">similar</a>, with industry studies contrasting research on the amount of leaching from food cans.</p>
<p>Does this mean that one of the sides is lying?  Well, a honest skeptical answer would be&#8230;no. There is no need for conspiracy theories to explain these disagreements. Mostly, the debate is fueled by the fact that nobody really knows how to assess the effects of xenoestrogen in humans and their significance. What amount of BPA do we need to ingest such that it will have an impact on our health? Should we consider amounts that are ingested all at once, in a short period of time, or over a lifetime? Is the concept of &#8220;lifetime xenoestrogen load&#8221; useful or not?</p>
<p>Answering these questions is what would unlock the current debates, as by now all sides are at least willing to accept that BPA has unquestionable biological activity as a xenoestrogen. Here is a short list of papers (there are many more) discussing the biological effects of BPA absorption in animals, effects directly related to estrogenic activity:</p>
<ul>
<li> Prepubertal exposure to compounds that increase prolactin secretion in the male rat: effects on the adult prostate. <span class="ti"><span title="Biology of reproduction."><a href="javascript:AL_get(this, 'jour', 'Biol Reprod.');" rel="nofollow" >Biol Reprod.</a></span> 1999 Dec;61(6):1636-43 (</span>PMID: 10570013<span class="ti">)<br />
</span></li>
<li> The xenoestrogen bisphenol A induces growth, differentiation, and c-fos gene expression in the female reproductive tract. <span class="ti"><span title="Endocrinology."><a href="javascript:AL_get(this, 'jour', 'Endocrinology.');" rel="nofollow" >Endocrinology.</a></span> 1998 Jun;139(6):2741-7 (</span>PMID: 9607780<span class="ti">)</span></li>
<li> The environmental estrogen bisphenol A stimulates prolactin release in vitro and in vivo. <span class="ti"><span title="Endocrinology."><a href="javascript:AL_get(this, 'jour', 'Endocrinology.');" rel="nofollow" >Endocrinology.</a></span> 1997 May;138(5):1780-6 (</span>PMID: 9112368<span class="ti">)</span></li>
<li> The developmental toxicity of bisphenol A in rats and mice. <span class="ti"><span title="Fundamental and applied toxicology : official journal of the Society of Toxicology."><a href="javascript:AL_get(this, 'jour', 'Fundam Appl Toxicol.');" rel="nofollow" >Fundam Appl Toxicol.</a></span> 1987 May;8(4):571-82 (</span>PMID: 3609543<span class="ti">)</span></li>
<li> Bisphenol A in the aquatic environment and its endocrine-disruptive effects on aquatic organisms. <span class="ti"><span title="Critical reviews in toxicology."><a href="javascript:AL_get(this, 'jour', 'Crit Rev Toxicol.');" rel="nofollow" >Crit Rev Toxicol.</a></span> 2007;37(7):607-25 (</span>PMID: 17674214<span class="ti">)</span></li>
</ul>
<p>You might have noticed that these papers are about ten years old. What is the current consensus on the biological activity of BPA, and its mode of action in animals? Here are a few more recent papers addressing these questions:</p>
<ul>
<li> In vivo effects of bisphenol A in laboratory rodent studies. <span class="ti"><span title="Reproductive toxicology (Elmsford, N.Y.)."><a href="javascript:AL_get(this, 'jour', 'Reprod Toxicol.');" rel="nofollow" >Reprod Toxicol.</a></span> 2007 Aug-Sep;24(2):199-224. (</span>PMID: 17683900<span class="ti">)</span></li>
<li> An evaluation of evidence for the carcinogenic activity of bisphenol A. <span class="ti"><span title="Reproductive toxicology (Elmsford, N.Y.)."><a href="javascript:AL_get(this, 'jour', 'Reprod Toxicol.');" rel="nofollow" >Reprod Toxicol.</a></span> 2007 Aug-Sep;24(2):240-52. (</span>PMID: 17706921<span class="ti">)</span></li>
<li> In vitro molecular mechanisms of bisphenol A action. <span class="ti"><span title="Reproductive toxicology (Elmsford, N.Y.)."><a href="javascript:AL_get(this, 'jour', 'Reprod Toxicol.');" rel="nofollow" >Reprod Toxicol.</a></span> 2007 Aug-Sep;24(2):178-98. (</span>PMID: 17628395<span class="ti">)</span></li>
</ul>
<p>The second paper is of special interest, as it summarizes the results of a panel discussion organized by the National Institutes of Health (NIEHS, NIDCR) and the United States Environmental Protection Agency, which  &#8220;convened an expert panel of scientists with experience in the field of environmental endocrine disruptors, particularly with knowledge and research on bisphenol A (BPA)&#8221;. This review suggests that there is a wide scientific consensus regarding the possible role of BPA in carcinogenesis. The consensus arising from the panel discussions is succintly summarized in the Conclusions section of the paper:</p>
<blockquote><p>Based on existing evidence, we are <em>confident</em> of the following:<br />
1. Natural estradiol-17β is a carcinogen as classified by the International Agency for Research on Cancer [37], [106] and [107].<br />
2. BPA acts as an endocrine disruptor with some estrogenic properties among other hormonal activities.</p>
<p>Based on existing evidence, we believe the following to be <em>likely</em> but requiring more evidence:<br />
1. BPA may be associated with increased cancers of the hematopoietic system and significant increases in interstitial-cell tumors of the testes.<br />
2. BPA alters microtubule function and can induce aneuploidy in some cells and tissues.<br />
3. Early life exposure to BPA may induce or predispose to pre-neoplastic lesions of the mammary gland and prostate gland in adult life.<br />
4. Pre-natal exposure to diverse and environmentally relevant doses of BPA alters mammary gland development in mice, increasing endpoints that are considered markers of breast cancer risk in humans.</p>
<p>Based on existing evidence, the following are <em>possible</em>:<br />
1. BPA may induce in vitro cellular transformation.<br />
2. In advanced prostate cancers with androgen receptor mutations, BPA may promote tumor progression and reduce time to recurrence.</p></blockquote>
<p>The paper also highlights areas of BPA research that require further enquiry:</p>
<blockquote><p>1. Does BPA exposure induce or promote cancers in mammary and prostate? What is its mode of action?<br />
2. Does BPA increase cancer susceptibility in estrogen-target organs (prostate, mammary gland, uterus, vagina, testis, ovary, etc.)?<br />
3. Does BPA reprogram target tissues during development through epigenetic mechanisms, including epigenetic marking of genes and morphogenetic processes involving tissue interactions?<br />
4. What are the most appropriate life stages for examining BPA-induced cancer susceptibility?<br />
5. Under what conditions might BPA promote DNA and/or microtubule aberrations?<br />
6. Identify biological consequence of long term, low-dose exposure on genomic integrity, cooperation with oncogenic insult and tumor management.<br />
7. Development of carcinogenesis paradigms with relevance to humans for assessing the ability of BPA to alter cancer risk.<br />
8. What species/strains are the most appropriate for assessing BPA-induced cancer susceptibility?<br />
9. Developing three-dimensional culture models to assess the mechanisms involved in altered morphogenesis of the target organs that may lead to neoplastic development.<br />
10. Epidemiology studies and development of new methodologies to evaluate BPA-cancer risks in humans.<br />
11. Development of markers for total xenoestrogen insult in humans.</p></blockquote>
<p>Do you remember the recent studies published in the journal Cancer Research, which received strong media attention?  <a href="http://cancerres.aacrjournals.org/cgi/content/abstract/68/7/2076" rel="nofollow"  target="_self">One</a> showed that BPA induces changes in gene expression in breast cancer cell lines coherent with those of high-grade lesions; <a href="http://cancerres.aacrjournals.org/cgi/content/abstract/68/6/1786" rel="nofollow"  target="_blank">the other</a> suggested that BPA is also able to alter the epigenetic profile in the progeny of BPA-treated epithelial cells. These papers are already addressing points 1 and 3 in the &#8220;further research needed&#8221; list, even if partially.</p>
<p>Past and present data, as well as the current consensus, seem to suggest that it might be prudent to limit BPA intake in humans until further research determines whether BPA is relatively safe &#8211; as we already know that it is not absolutely safe. Until the time when more rigorous studies are conducted, and larger data sets on humans collected, we will not know for sure whether BPA poses a significant danger to human health &#8211; it is left to the individual, but also to public health agencies around the world to make a decision on whether to forbid BPA use especially in places where it can enter the food chain&#8230;or not. But it seems that there is reasonable evidence that BPA release in the environment should be limited as much as possible, as smaller organisms are sensitive to much smaller amounts of BPA than humans seem to be.</p>
<p>Making decision in relation to BPA is made even more complicated by the fact that there are many estrogen-like compounds in our environment which are already in the food chain, and which we can absorb by consuming both animal and vegetable products: BPA absorption might only be the tip of the iceberg when it comes to xenoestrogen intake. It would be useful to see what the &#8220;total xenoestrogen insult&#8221; is in an average adult who consumes meat, vegetables and dairy, and to see what role BPA is playing to increase this insult. Only then we will be able to assess whether cancer risk arising from BPA ingestion is significant, or whether we would do better to worry about different sources of xenoestrogen.</p>
<p><span style="\"><a href="\" rel="nofollow" ><img src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-Trans.png" alt="ResearchBlogging.org" width="80" height="50" /></a></span>KERI, R., HO, S., HUNT, P., KNUDSEN, K., SOTO, A., PRINS, G. (2007). An evaluation of evidence for the carcinogenic activity of bisphenol A. <span style="font-style: italic;">Reproductive Toxicology, 24</span>(2), 240-252. DOI: <a href="http://dx.doi.org/10.1016/j.reprotox.2007.06.008" rel="nofollow" rev="review" >10.1016/j.reprotox.2007.06.008</a></p>

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	<li><a href="http://gdisauro.com/2008/04/afraid-of-bisphenol-a/" title="Who&#8217;s afraid of Bisphenol A? (part 1) (April 24, 2008)">Who&#8217;s afraid of Bisphenol A? (part 1)</a> (5)</li>
	<li><a href="http://gdisauro.com/2008/05/is-cancer-a-cure/" title="Is cancer a cure? (May 27, 2008)">Is cancer a cure?</a> (0)</li>
</ul>

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		<title>Who&#8217;s afraid of Bisphenol A? (part 1)</title>
		<link>http://gdisauro.com/2008/04/afraid-of-bisphenol-a/</link>
		<comments>http://gdisauro.com/2008/04/afraid-of-bisphenol-a/#comments</comments>
		<pubDate>Thu, 24 Apr 2008 18:05:38 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Cancer biology]]></category>
		<category><![CDATA[Toxicology]]></category>
		<category><![CDATA[bisphenol A]]></category>
		<category><![CDATA[BPA]]></category>
		<category><![CDATA[breast]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[estrogen]]></category>
		<category><![CDATA[Medicine]]></category>
		<category><![CDATA[plastic bottles]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=39</guid>
		<description><![CDATA[Bisphenol A, an estrogen-like compound used to line water bottles, has been found to be able to alter gene expression in a breast cancer cell line, a change similar to that seen in high-grade breast  cancer lesions. But bisphenol A has been known to affect more than cell lines, and research into its impact on the reproductive system and toxicity has been conducted since the 1960s.<br />]]></description>
			<content:encoded><![CDATA[<p>In these days you <a href="http://www.theglobeandmail.com/servlet/story/RTGAM.20080418.wlcancer18/BNStory/specialScienceandHealth/home" rel="nofollow"  target="_blank">might have heard</a> some reporting about Health Canada officially stating that they consider bisphenol A to be a chemical potentially <a href="http://www.sciencedaily.com/releases/2008/04/080422114734.htm" rel="nofollow"  target="_blank">dangerous for human health</a>, and that plastic bottles containing bisphenol A-based lining are starting to get pulled out (voluntarily) of stores. This announcement is coming out at the same time as two papers, published in the journal Cancer Research. <a href="http://cancerres.aacrjournals.org/cgi/content/abstract/68/7/2076" rel="nofollow"  target="_self">One</a> documents that bisphenol A (also known as BPA) induces changes in gene expression in breast cancer cell lines coherent with those of high-grade lesions; <a href="http://cancerres.aacrjournals.org/cgi/content/abstract/68/6/1786" rel="nofollow"  target="_blank">the other</a> shows that BPA is also able to alter the epigenetic profile in the progeny of BPA-treated epithelial cells.<br />
<span id="more-39"></span><br />
But it would be a mistake to base a discussion on BPA only referring to these two papers and recent events; in fact, the academic discussion regarding BPA effects on our environment, ecology, and health has been ongoing &#8211; since the 1960s.  And potential carcinogenicity is only the tip of the iceberg: a PubMed search using the terms &#8220;bisphenol A AND estrogen&#8221; generated 1375 hits, while a similar search, using the terms &#8220;bisphenol A AND estrogen AND cancer&#8221;, only generated 165 hits.</p>
<p>I am therefore going to split this article into two parts. In this first part, I will introduce the concept of xenoestrogens, talk a little bit about what bisphenol A is and what is used for, and tell the story of the discovery of its &#8211; initially unsuspected &#8211; effects on systems usually regulated by estrogen and similar hormones. In the second part, I will talk about the research regarding BPA potential toxicity, carcinogenicity, and the medical and ecological implications of BPA presence in our environment.</p>
<p>First of all, let&#8217;s get to know the steroid hormones, a hormone family estrogens are happy members of. That&#8217;s right &#8211; estrogens: this is a sub-family of steroid hormones. There are three main estrogens in humans: <a href="http://en.wikipedia.org/wiki/Estradiol" rel="nofollow" title="Estradiol" >estradiol</a>, <a href="http://en.wikipedia.org/wiki/Estriol" rel="nofollow" title="Estriol" >estriol</a>, and <a href="http://en.wikipedia.org/wiki/Estrone" rel="nofollow" title="Estrone" >estrone</a>, produced from <a href="http://en.wikipedia.org/wiki/Androgen" rel="nofollow" title="Androgen" >androgens</a>. The process of producing steroid hormones (both male and female) from cholesterol is called <a href="http://en.wikipedia.org/wiki/Steroidogenesis" rel="nofollow" class="mw-redirect" title="Steroidogenesis" >steroidogenesis</a>. Here is a sketch of the process (click on the thumbnail to get to the full-sized image).<br />
<a href="http://en.wikipedia.org/wiki/Image:Steroidogenesis.gif" rel="nofollow"  target="_blank"><img class="alignnone size-thumbnail wp-image-40" title="steroidogenesis-web" src="http://gdisauro.com/wp-content/uploads/2008/04/steroidogenesis-web-150x150.jpg" alt="" width="150" height="150" /></a><br />
Estrogens are important for the determination of female secondary sexual characters, and not only in humans. They function during development, and during certain types of tumorigenesis. On the other side of the family, we find the androgens, the male-determining hormones. They are also derived from cholesterol&#8230;and in fact, estrogens are produced after chemical modification of some androgens. A commonly known androgen is testosterone.</p>
<p>Some man-made (say, BPA) or natural (for instance <a href="http://en.wikipedia.org/wiki/Phytoestrogen" rel="nofollow"  target="_blank">phytoestrogen</a>) compounds with a structure close to that of the steroid hormones are able to sometimes reproduce the physiological effects of these hormones. These are sometimes called xenoestrogens &#8211; literally, foreign estrogens. How was it discovered that BPA is in fact a xenoestrogen?</p>
<p><a href="http://endo.endojournals.org/cgi/reprint/132/6/2279" rel="nofollow"  target="_blank">One of the studies</a> documenting this discovery was a perfect example of serendipity. Researchers at Stanford University were trying to find out whether the yeast Saccharomyces cerevisiae is able to produce estrogen. To do this, they decided to grow the yeast in common flasks, and to run an assay for endogenously produced estrogen. They quickly realized that radioactively-labelled estradiol added to the growth medium was being displaced by estrogen coming from another source. This source turned out to be not the yeast, but the polycarbonate flasks themselves. The substance causing the effect was purified using high-performance liquid chromatography (<a href="http://en.wikipedia.org/wiki/HPLC" rel="nofollow"  target="_blank">HPLC</a>), and was found to be BPA. Tests on mammalian cells showed that BPA was effectively an estrogenic compound, able to induce expression of progesterone receptors, and to bind estrogen receptors in mammalian cells.</p>
<p>We now know that BPA&#8217;s ability to mimic endogenous estrogen has the ability to affect the reproductive system, and sexual development &#8211; at least in frogs. The sex ratio in frogs being exposed to BPA is altered, and <a href="http://www.ncbi.nlm.nih.gov/pubmed/14643292?ordinalpos=2&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum" rel="nofollow"  target="_blank">feminization can be observed</a> when frogs are exposed, as tadpoles, to varying concentrations of BPA &#8211; and this correlates with an increased expression of the estrogen receptor.</p>
<p>What is BPA, and why is it used? <a href="http://en.wikipedia.org/wiki/Bisphenol_A" rel="nofollow"  target="_blank">Bisphenol A</a> is a compound that can be used to create polymeric plastics. Most specifically, BPA finds its main use in the production of polycarbonate plastics, which are hard to shatter, and therefore used, among other things, in laboratory glassware, bottles for drinking water and food containers. Polycarbonates are also used as sealers &#8211; found in the lining of plastic bottles or tin cans. <a href="http://en.wikipedia.org/wiki/Polycarbonate" rel="nofollow"  target="_blank">Polycarbonate</a> plastics are extremely resistant to heat and mechanical stress, but bleach and strong alkali can cause the release of BPA from the plastic. And apparently, these plastics <a href="http://www.ncbi.nlm.nih.gov/pubmed/18311628?ordinalpos=1&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum" rel="nofollow"  target="_blank">initially leak</a> low levels of BPA when exposed to <a href="http://www.ncbi.nlm.nih.gov/pubmed/18155859?ordinalpos=2&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum" rel="nofollow"  target="_blank">boiling water</a>, about 55 times more than when the water is at room temperature.</p>
<p>But is this leakage dangerous for human and animal health? Is the evidence in favor (or against) its health effects reliable, unbiased and coherent? Is it safe to use polycarbonate containers for your water and food? We will find out more about this in the next post.</p>
<p><strong>Post Scriptum:</strong> this post was kindly included in the latest edition of <a href="http://thebeagleproject.blogspot.com/2008/05/tangled-bank-105.html" rel="nofollow"  target="_blank">Tangled Bank</a>.</p>
<p><strong>Citations</strong><br />
<span style="\"><a href="\" rel="nofollow" ><img src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-Trans.png" alt="ResearchBlogging.org" width="80" height="50" /></a></span><br />
Krishnan, A.V. (1993). Bisphenol-A: an estrogenic substance is released from polycarbonate flasks during autoclaving.. <span style="font-style: italic;">Endocrinology, 132</span>(6), 2279-2286.</p>
<p>Levy<br />
, G. (2004). Bisphenol A induces feminization in Xenopus laevis tadpoles. <span style="font-style: italic;">Environmental Research, 94</span>(1), 102-111. DOI: <a href="http://dx.doi.org/10.1016/S0013-9351(03)00086-0" rel="nofollow" rev="review" >10.1016/S0013-9351(03)00086-0</a></p>
<p>LE, H., CARLSON, E., CHUA, J., BELCHER, S. (2007). Bisphenol A is released from polycarbonate drinking bottles and mimics the neurotoxic actions of estrogen in developing cerebellar neurons. <span style="font-style: italic;">Toxicology Letters DOI: <a href="http://dx.doi.org/10.1016/j.toxlet.2007.11.001" rel="nofollow" rev="review" >10.1016/j.toxlet.2007.11.001</a></span></p>
<p>Maragou, N., Makri, A., Lampi, E., Thomaidis, N., Koupparis, M. (2008). Migration of bisphenol A from polycarbonate baby bottles under real use conditions. <span style="font-style: italic;">Food Additives &amp; Contaminants, 25</span>(3), 373-383. DOI: <a href="http://dx.doi.org/10.1080/02652030701509998" rel="nofollow" rev="review" >10.1080/02652030701509998</a></p>

	<br><h4>Related posts (generated)</h4>
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	<li><a href="http://gdisauro.com/2008/05/afraid-of-bisphenol-2/" title="Who&#8217;s afraid of Bisphenol A? (part 2) (May 1, 2008)">Who&#8217;s afraid of Bisphenol A? (part 2)</a> (5)</li>
	<li><a href="http://gdisauro.com/2008/11/statins-benefit-healthy-people/" title="Statins might benefit healthy people (November 12, 2008)">Statins might benefit healthy people</a> (2)</li>
	<li><a href="http://gdisauro.com/2008/05/is-cancer-a-cure/" title="Is cancer a cure? (May 27, 2008)">Is cancer a cure?</a> (0)</li>
</ul>

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		<title>Female flies get turned on &#8211; by a light switch</title>
		<link>http://gdisauro.com/2008/04/flies-turned-on-by-light/</link>
		<comments>http://gdisauro.com/2008/04/flies-turned-on-by-light/#comments</comments>
		<pubDate>Sat, 19 Apr 2008 17:07:29 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Neurobiology]]></category>
		<category><![CDATA[behavior]]></category>
		<category><![CDATA[drosophila]]></category>
		<category><![CDATA[fruitless]]></category>
		<category><![CDATA[gender]]></category>
		<category><![CDATA[light]]></category>
		<category><![CDATA[sex]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=25</guid>
		<description><![CDATA[In today's study, scientists tried to activate certain neurons using what could basically thought of as a "light switch", and observed females performing a characteristic male courtship song. Although the BBC suggestively calls this a "mind-control sex swap", we are really not looking at the sex of the flies - but rather, at gender-specific behaviors.<br />]]></description>
			<content:encoded><![CDATA[<p>In today&#8217;s study, scientists tried to activate certain neurons using what could basically be thought of as a &#8220;light switch&#8221;, and observed female flies performing a characteristic male courtship song. <a href="http://www.cell.com/content/article/abstract?uid=PIIS0092867408002158" rel="nofollow" >This study</a> is the logical consequence of others which were conducted on <em>fruitless</em> mutants not so long ago. Scientists studying fruit flies mutant in a gene called <em>fruitless</em> realized that &#8220;fruitless&#8221; females display male courtship behavior when expressing certain versions of the protein product of <em>fruitless</em>, which seems to be needed in a specific set of neurons for this behavioral effect of the mutation to show up.</p>
<p>These studies on &#8220;fruitless&#8221; flies are some of the coolest studies on gender-specific behavior around. Although the BBC suggestively calls this a &#8220;<a href="http://news.bbc.co.uk/2/hi/science/nature/7350403.stm" rel="nofollow" >mind-control sex swap</a>&#8220;, this is definitely not a sex swap. One characteristic of fruitless flies is that their sexual characteristics are perfectly normal &#8211; the males are fertile, and so are the females, and there is no deformation of their bodies. So we are really not looking at the sex of the flies &#8211; but rather, at their gender. Which is what makes these studies so intriguing.</p>
<p><span id="more-25"></span></p>
<p>First of all, let me briefly explain how courtship works in <em>Drosophila melanogaster</em>. The male is the only one that can be said to display courtship behavior: when a male intends to court a female, it uses wing vibrations to produce a &#8220;courtship song&#8221;. This song can be identified because of the specific frequencies of the sounds emitted by the male. There are two &#8220;modes&#8221; of emission, known as the sine song, at ∼140–170 Hz, and the pulse song, constituted of  brief and repetitive amplitude modulations in a range of ∼150–300 Hz.  Females respond to this by allowing the male to copulate (or not; whether the male is successful depends on a variety of other factors, including winning &#8220;fights&#8221; with other males).</p>
<p>What about these <em>fruitless</em> (<em>fru</em>) flies? It was already known that <em>fruitless</em> encodes a gene product necessary for the determination of sex-specific courtship behavior in flies, and that the products of this gene exist in <a href="http://http//www.current-biology.com/content/article/abstract?uid=PIIS0960982206015004&amp;session=" rel="nofollow"  target="_blank">two main versions</a> produced by alternative splicing: a male version and a female version. A <a href="http://http//www.cell.com/content/article/fulltext?uid=PIIS0092867405004071&amp;refuid=PIIS0092867408002158" rel="nofollow"  target="_blank">previous study</a> done in Barry Dickson&#8217;s lab showed that the male version is necessary for the determination of male courtship behavior and sexual orientation. The gene is in fact also able to induce male courtship behavior in females when spliced in a male-specific manner (causing the male version of the protein to be produced in females). On the other hand, loss of male-specific splicing in males causes the disappearance of all typical male courtship behavior.</p>
<p>This whole situation is complicated by the fact that there are several different alleles (variants) of the <em>fru</em> gene, able to alter not only courtship, but sexual orientation as well. For example, males with certain mutant forms of <em>fru</em> display an enhanced form of homosexual behavior. What do I mean by that? You might want to see for yourself in this video from one of the Dickson papers. Click on the image to go to the video, which gives a new dimension to the phrase &#8220;love train&#8221;.</p>
<p><a href="http://www.cell.com/cgi/content/full/121/5/785/DC1/mmc3.mov" rel="nofollow" ><img class="alignnone size-medium wp-image-28" title="fru-males-making-chains-poster" src="http://gdisauro.com/wp-content/uploads/2008/04/fru-males-making-chains-poster.jpg" alt="" width="155" height="155" /></a></p>
<p>Now we can get back to today&#8217;s study. Researchers working at Yale and Oxford have decided to look at the neuronal circuitry expressing the products of the <em>fru</em> gene in male and female flies, and to see what would happen when one activates this neuronal circuit in <em>fru</em> mutants of both sexes. The experiments showed that activating this circuit results in different responses in males and females, and that the responses are dictated by the version of the <em>fru</em> protein expressed by the animal. Thus, wild-type males and male-<em>fru</em>-expressing females can produce the wing movements and the courtship song; wild-type females will move their wings and produce a sound, but not a courtship song.</p>
<p>The neuronal circuitry was artificially activated by shining light on the neurons, which were made to express a light-sensitive ion channel.</p>
<p>What does this mean? When ions are allowed into neurons by ion channels, the neurons depolarize &#8211; and the depolarization wave moves all along the membrane of the neuron, till it reaches the synapse, where neurotransmitter release occurs. All you need to to do activate a neuron in a controlled way is to make it express an ion channel you can control. Ion channels need energy in the form of ATP to work, and therefore providing ATP can induce depolarization. You can then use a form of ATP linked to another compound: this compound makes the ATP &#8220;inactive&#8221;, but when you shine light on it, the &#8220;normal&#8221; ATP is released, and the ions channels open.</p>
<p>How do you make sure that the channels are present in the neurons you are studying? You use a promoter specific to those neurons &#8211; so that the gene coding for the channels makes protein only there. And what better promoter to study <em>fru</em>-expressing neurons&#8230;than the <em>fru </em>promoter? In fact, that is the one used in this study.</p>
<p>This short video summarizes the results of the study. I love when the narrator says that &#8220;to make a female sing like a male, all you need to do is to turn on one gene, and chop her head off&#8221;. It does give the wrong impression, doesn&#8217;t it? The head is chopped so that the female does not stop &#8220;singing&#8221;, as that behavior usually requires interaction with another fly, and it is intermittent. Which is not helpful if you want to analyze the song of that one fly in the experiment.</p>
<p><a href="http://www.youtube.com/watch?v=LSnf2N0kUJ0" rel="nofollow"  target="_blank"><img class="alignnone size-medium wp-image-38" title="youtube-gene-switch-causes-female-flies-to-sing-like-males" src="http://gdisauro.com/wp-content/uploads/2008/04/youtube-gene-switch-causes-female-flies-to-sing-like-males-300x252.jpg" alt="Click on image to watch video" width="300" height="252" /></a></p>
<p>Now, apart from the results and the hype, you might still be wondering what are the implications of the study, from a more neurobiological point of view. What the results suggest is that behavioral differences between the sexes might not be necessarily due to differences in neural circuitry, but in the presence or absence of sex-specific regulators of such circuitry. Although it is usually true that there are differences in the overall neuronal structure of males and females (with males usually having extra neurons dedicated to male-specific behavior, which is something that is surely true of the nematode <em>C. elegans</em>), the fact that some shared circuitry might also be part to fundamental sex-specific behaviors is also something that needs to be considered.</p>
<p>As a last note, in case you are wondering: while <a href="http://http//en.wikipedia.org/wiki/Fruitless" rel="nofollow"  target="_blank">some sources</a> (which do not attach any citation to this statement) say that the <em>fruitless</em> gene is not present in mammals, I have run my own <a href="http://http//www.ensembl.org/Homo_sapiens/searchview?species=;idx=;q=fruitless" rel="nofollow"  target="_blank">search</a>, and it turns out that humans might have a homologue of the fly gene. The name of the homologue is <span><a href="http://http//www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=Retrieve&amp;dopt=Graphics&amp;list_uids=9278" rel="nofollow"  target="_blank">ZBTB22</a> (which tells me this gene has not been well characterized), a transcription factor, just like fruitless is. Does this mean that it has the same function in humans? Well, given that we do not make courtship songs using wings, it probably doesn&#8217;t.</span></p>
<p><strong>Curious facts</strong>: we have known about gay fly males for quite a while. In fact, the <em>fru</em> mutants were initially created because of X-ray radiation in 1963, and there is a <a href="http://http//www.genetics.org/cgi/reprint/121/4/773" rel="nofollow"  target="_blank">1989 paper</a> describing the effects of the <em>fruitless</em> defects in males, and tracking them back to a chromosomal inversion, which must have probably been caused by DNA breaks and repairs following radiation exposure in the original strain. Nowadays people are looking at different mutated alleles of <em>fru</em>, not at the original version created through radiation exposure.</p>
<p><strong>Citation</strong><br />
<span style="\"><a href="http://gdisauro.com/wp-admin/\"><img src="http://www.researchblogging.org/images/rbicons/ResearchBlogging-Medium-Trans.png" alt="ResearchBlogging.org" width="80" height="50" /></a></span><br />
Clyne, D., Miesenböck, G. (2008). Sex-Specific Control and Tuning of the Pattern Generator for Courtship Song in Drosophila. <span style="font-style: italic;">Cell, 133</span>(?), 354-363.</p>
<p>Male fly image courtesy of <a href="http://http//en.wikipedia.org/wiki/Image:Drosophila_melanogaster_-_side_%28aka%29.jpg" rel="nofollow"  target="_blank">Wikipedia Commons</a></p>

	<br><h4>Related posts (generated)</h4>
	<ul class="st-related-posts">
	<li><a href="http://gdisauro.com/2008/05/gay-love-on-the-fly/" title="Gay love on the fly (May 7, 2008)">Gay love on the fly</a> (0)</li>
</ul>

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		<title>How things are going&#8230;</title>
		<link>http://gdisauro.com/2008/04/how-things-are-going/</link>
		<comments>http://gdisauro.com/2008/04/how-things-are-going/#comments</comments>
		<pubDate>Fri, 18 Apr 2008 05:50:36 +0000</pubDate>
		<dc:creator>gio</dc:creator>
				<category><![CDATA[Life]]></category>
		<category><![CDATA[Medicine]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://gdisauro.com/?p=14</guid>
		<description><![CDATA[School is over. It’d better be, after five years of undergrad + co-op. So the time has come for me to put my hands on this website, write some posts, fill in the pages…and figure out the back end. While I try to figure out something really interesting to talk about, I am going to pick some science news for you (from Science Daily).<br />]]></description>
			<content:encoded><![CDATA[<p>School is over. It&#8217;d better be, after five years of undergrad + co-op. So the time has come for me to put my hands on this website, write some posts, fill in the pages&#8230;and figure out the back end.</p>
<p>While I try to figure out something really interesting to talk about, I am going to pick some science news for you (from <a href="http://www.sciencedaily.com/" rel="nofollow" >Science Daily</a>). Read along, I am sure you&#8217;ll find something interesting&#8230;such as the news that reducing your caloric intake can help you prevent cancer. This not completely unexpected, as it is also known that a reduced-calorie diet also improves longevity. But are you, are we, going to start depriving us of food (and thinking about food 50% of the time) in exchange of a reduced chance to contract cancer? I honestly doubt it.</p>
<p><strong>Stem Cell Marker Controls Two Key Cancer Pathways</strong></p>
<blockquote><p>Researchers at Georgetown University Medical Center have discovered that a gene associated with human breast stem cells can stimulate development of mammary cells by activating two critical cancer pathways. They say this finding, reported at the annual meeting of the American Association for Cancer Research (AACR), provides new evidence that breast cancer can arise from stem cells and that targeting this gene might provide a new way to treat cancers of the breast as well as other tumor types.</p></blockquote>
<p>More <a href="http://www.sciencedaily.com/releases/2008/04/080414113212.htm" rel="nofollow" >here</a>.</p>
<p><strong>Molecule Prompts Blood Stem Cells To Help Repair Heart Damage In Animal Model</strong></p>
<blockquote><p>Researchers at UT Southwestern Medical Center have for the first time used drug-treated blood stem cells to repair heart damage in an animal model, results that might point to methods for healing injuries from heart attacks or disease.</p></blockquote>
<p>More <a href="http://www.sciencedaily.com/releases/2008/04/080414174848.htm" rel="nofollow" >here</a>.</p>
<p><strong>Calorie Restricted Diet Prevents Pancreatic Inflammation And Cancer, Study Suggests</strong></p>
<blockquote><p>Prevention of weight gain with a restricted calorie diet sharply reduced the development of pancreatic lesions that lead to cancer in preclinical research reported April 15 by researchers from The University of Texas at Austin and The University of Texas M. D. Anderson Cancer Center at the American Association for Cancer Research annual meeting.</p></blockquote>
<p>More <a href="http://www.sciencedaily.com/releases/2008/04/080414171502.htm" rel="nofollow" >here</a>.</p>
<p><strong>Ovarian Cancer Stem Cells Identified, Characterized</strong></p>
<blockquote><p>Researchers at Yale School of Medicine have identified, characterized and cloned ovarian cancer stem cells and have shown that these stem cells may be the source of ovarian cancer&#8217;s recurrence and its resistance to chemotherapy.</p></blockquote>
<p>More <a href="http://www.sciencedaily.com/releases/2008/04/080417152031.htm" rel="nofollow" >here</a>.</p>

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